Bookmarks
SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Scotland
Population Size
Not reported
Years
2021
Associated BioSamples
None/not available
Geographic coverage
United Kingdom
Scotland
Lead time
Not applicable
Summary
Summary of SARS-CoV-2 lineages and mutations
Documentation
File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls and a list of all nucleotide mutations found.
Dataset type
Health and disease
Dataset sub-type
Not applicable
Keywords
Genome, Covid-19
Observations
Observed Node | Disambiguating Description | Measured Value | Measured Property | Observation Date |
|---|---|---|---|---|
Events | 721005 | Count | 20 Aug 2021 |
Provenance
Purpose of dataset collection
Other
Source of data extraction
LIMS
Collection source setting
Other
Patient pathway description
No
Image contrast
Not stated
Biological sample availability
None/not available
Structural Metadata
Details
Publishing frequency
Weekly
Version
6.0.0
Modified
06/09/2024
Distribution release date
19/08/2021
Citation Requirements
COG-UK
Coverage
Start date
28/02/2021
Time lag
1-2 weeks
Geographic coverage
United Kingdom, Scotland
Maximum age range
150
Follow-up
Other
Accessibility
Language
en
Controlled vocabulary
OTHER
Format
csv
Data Access Request
Dataset pipeline status
Not available
Time to dataset access
Not applicable
Access request cost
Access method category
TRE/SDE
Access service description
Scottish National Safe Haven / Trusted Research Environment
https://publichealthscotland.scot/services/data-research-and-innovation-services/electronic-data-research-and-innovation-service-edris/national-safe-haven-nsh/Jurisdiction
GB-SCT
Data use limitation
Genetic studies only
Data use requirements
Project-specific restrictions
Data Controller
Public Health Scotland
Data Processor
Public Health Scotland